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Registro completo
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Biblioteca (s) : |
INIA Treinta y Tres. |
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Fecha : |
15/12/2020 |
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Actualizado : |
08/02/2021 |
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Tipo de producción científica : |
Artículos en Revistas Indexadas Internacionales |
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Autor : |
ROSAS, J.E.; ESCOBAR, M.; MARTÍNEZ, S.; BLANCO, P.H.; PÉREZ DE VIDA, F.; QUERO, G.; GUTIÉRREZ, L.; BONNECARRERE, V. |
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Afiliación : |
JUAN EDUARDO ROSAS CAISSIOLS, INIA (Instituto Nacional de Investigación Agropecuaria), Uruguay; MAIA ESCOBAR BONORA, INIA (Instituto Nacional de Investigación Agropecuaria), Uruguay; SEBASTIÁN MARTÍNEZ KOPP, INIA (Instituto Nacional de Investigación Agropecuaria), Uruguay; PEDRO HORACIO BLANCO BARRAL, INIA (Instituto Nacional de Investigación Agropecuaria), Uruguay; FERNANDO BLAS PEREZ DE VIDA, INIA (Instituto Nacional de Investigación Agropecuaria), Uruguay; GASTÓN QUERO CORRALLO, INIA (Instituto Nacional de Investigación Agropecuaria), Uruguay; LUCÍA GUTIÉRREZ, Facultad de Agronomía, UDELAR; University of Wisconsin-Madison, USA.; MARIA VICTORIA BONNECARRERE MARTINEZ, INIA (Instituto Nacional de Investigación Agropecuaria), Uruguay. |
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Título : |
Epistasis and quantitative resistance to Pyricularia oryzae revealed by GWAS in advanced rice breeding populations. |
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Fecha de publicación : |
2020 |
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Fuente / Imprenta : |
Agriculture 2020, 10(12), 622. Open Access. DOI: https://doi.org/10.3390/agriculture10120622 |
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DOI : |
10.3390/agriculture10120622 |
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Idioma : |
Inglés |
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Notas : |
Article history: Received: 30 October 2020 / Revised: 23 November 2020 / Accepted: 24 November 2020 / Published: 11 December 2020. |
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Contenido : |
Rice blast caused by Pyricularia oryzae is a major rice disease worldwide. Despite the detailed knowledge on major resistance genes available to date, little is known about how these genes interact with quantitative blast resistance loci and with the genetic background. Knowledge on these interactions is crucial for assessing the usefulness of introgressed resistance loci in breeding germplasm. Our goal was to identify quantitative trait loci (QTL) for blast resistance in rice breeding populations and to describe how they interact among each other and with the genetic background. To that end, resistance to blast was mapped by genome-wide association study (GWAS) in two advanced rice breeding subpopulations, one made of 305 indica type inbred lines, and the other of 245 tropical japonica inbred lines. The interactions and main effects of blast resistance loci were assessed in a multilocus model. Well known, major effect blast resistance gene clusters were detected in both tropical japonica (Pii/Pi3/Pi5) and indica (Piz/Pi2/Pi9) subpopulations with the GWAS scan 1. When these major effect loci were included as fixed cofactors in subsequent GWAS scans 2 and 3, additional QTL and more complex genetic architectures were revealed. The multilocus model for the tropical japonica subpopulation showed that Pii/Pi3/Pi5 had significant interaction with two QTL in chromosome 1 and one QTL in chromosome 8, together explaining 64% of the phenotypic variance. In the indica subpopulation a significant interaction among the QTL in chromosomes 6 and 4 and the genetic background, together with Piz/Pi2/Pi9 and QTL in chromosomes 1, 4 and 7, explained 35% of the phenotypic variance. Our results suggest that epistatic interactions can play a major role modulating the response mediated by major effect blast resistance loci such as Pii/Pi3/Pi5. Furthermore, the additive and epistatic effects of multiple QTL bring additional layers of quantitative resistance with a magnitude comparable to that of major effect loci. These findings highlight the need of genetic background-specific validation of markers for molecular assisted blast resistance breeding and provide insights for developing quantitative resistance to blast disease in rice. MenosRice blast caused by Pyricularia oryzae is a major rice disease worldwide. Despite the detailed knowledge on major resistance genes available to date, little is known about how these genes interact with quantitative blast resistance loci and with the genetic background. Knowledge on these interactions is crucial for assessing the usefulness of introgressed resistance loci in breeding germplasm. Our goal was to identify quantitative trait loci (QTL) for blast resistance in rice breeding populations and to describe how they interact among each other and with the genetic background. To that end, resistance to blast was mapped by genome-wide association study (GWAS) in two advanced rice breeding subpopulations, one made of 305 indica type inbred lines, and the other of 245 tropical japonica inbred lines. The interactions and main effects of blast resistance loci were assessed in a multilocus model. Well known, major effect blast resistance gene clusters were detected in both tropical japonica (Pii/Pi3/Pi5) and indica (Piz/Pi2/Pi9) subpopulations with the GWAS scan 1. When these major effect loci were included as fixed cofactors in subsequent GWAS scans 2 and 3, additional QTL and more complex genetic architectures were revealed. The multilocus model for the tropical japonica subpopulation showed that Pii/Pi3/Pi5 had significant interaction with two QTL in chromosome 1 and one QTL in chromosome 8, together explaining 64% of the phenotypic variance. In the indica subpopulation a s... Presentar Todo |
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Palabras claves : |
DISEASE RESISTANCE; GWAS; LEAF BLAST; MAGNAPORTHE ORYZAE; PYRICULARIA ORYZAE; QTL BY GENETIC BACKGROUND INTERACTION; QTL by QTL INTERACTION; RESISTENCIA A ENFERMEDADES. |
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Asunto categoría : |
H20 Enfermedades de las plantas |
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URL : |
http://www.ainfo.inia.uy/digital/bitstream/item/14870/1/agriculture-10-00622.pdf
https://www.mdpi.com/2077-0472/10/12/622
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Marc : |
LEADER 03395naa a2200325 a 4500
001 1061583
005 2021-02-08
008 2020 bl uuuu u00u1 u #d
024 7 $a10.3390/agriculture10120622$2DOI
100 1 $aROSAS, J.E.
245 $aEpistasis and quantitative resistance to Pyricularia oryzae revealed by GWAS in advanced rice breeding populations.$h[electronic resource]
260 $c2020
500 $aArticle history: Received: 30 October 2020 / Revised: 23 November 2020 / Accepted: 24 November 2020 / Published: 11 December 2020.
520 $aRice blast caused by Pyricularia oryzae is a major rice disease worldwide. Despite the detailed knowledge on major resistance genes available to date, little is known about how these genes interact with quantitative blast resistance loci and with the genetic background. Knowledge on these interactions is crucial for assessing the usefulness of introgressed resistance loci in breeding germplasm. Our goal was to identify quantitative trait loci (QTL) for blast resistance in rice breeding populations and to describe how they interact among each other and with the genetic background. To that end, resistance to blast was mapped by genome-wide association study (GWAS) in two advanced rice breeding subpopulations, one made of 305 indica type inbred lines, and the other of 245 tropical japonica inbred lines. The interactions and main effects of blast resistance loci were assessed in a multilocus model. Well known, major effect blast resistance gene clusters were detected in both tropical japonica (Pii/Pi3/Pi5) and indica (Piz/Pi2/Pi9) subpopulations with the GWAS scan 1. When these major effect loci were included as fixed cofactors in subsequent GWAS scans 2 and 3, additional QTL and more complex genetic architectures were revealed. The multilocus model for the tropical japonica subpopulation showed that Pii/Pi3/Pi5 had significant interaction with two QTL in chromosome 1 and one QTL in chromosome 8, together explaining 64% of the phenotypic variance. In the indica subpopulation a significant interaction among the QTL in chromosomes 6 and 4 and the genetic background, together with Piz/Pi2/Pi9 and QTL in chromosomes 1, 4 and 7, explained 35% of the phenotypic variance. Our results suggest that epistatic interactions can play a major role modulating the response mediated by major effect blast resistance loci such as Pii/Pi3/Pi5. Furthermore, the additive and epistatic effects of multiple QTL bring additional layers of quantitative resistance with a magnitude comparable to that of major effect loci. These findings highlight the need of genetic background-specific validation of markers for molecular assisted blast resistance breeding and provide insights for developing quantitative resistance to blast disease in rice.
653 $aDISEASE RESISTANCE
653 $aGWAS
653 $aLEAF BLAST
653 $aMAGNAPORTHE ORYZAE
653 $aPYRICULARIA ORYZAE
653 $aQTL BY GENETIC BACKGROUND INTERACTION
653 $aQTL by QTL INTERACTION
653 $aRESISTENCIA A ENFERMEDADES
700 1 $aESCOBAR, M.
700 1 $aMARTÍNEZ, S.
700 1 $aBLANCO, P.H.
700 1 $aPÉREZ DE VIDA, F.
700 1 $aQUERO, G.
700 1 $aGUTIÉRREZ, L.
700 1 $aBONNECARRERE, V.
773 $tAgriculture 2020, 10(12), 622. Open Access. DOI: https://doi.org/10.3390/agriculture10120622
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INIA Treinta y Tres (TT) |
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| Registros recuperados : 69 | |
| 1. |  | ALANIZ, S.; GEPP, V.; MONDINO, P.; LEONI, C.; MUJICA, V.; NUÑEZ, S.; SCATONI, I. Guía de identificación y monitoreo de enfermedades y plagas en frutales de hoja caduca y vid bajo manejo integrado. Montevideo (UY): AFRUPI, 2016. 135 p. AFRUPI (Asociación de Fruticultores de Producción Integrada), es una organización de productores que tiene por fin promover un modelo de producción que respeta el medio ambiente, cuida los recursos naturales y al consumidor (fundada el 31...| Biblioteca(s): INIA La Estanzuela; INIA Las Brujas; INIA Tacuarembó; INIA Treinta y Tres. |
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| 2. | | ALANIZ, S.; GEPP, V.; MONDINO, P.; LEONI, C.; MUJICA, V.; NUÑEZ, S.; SCATONI, I Monitoreo de enfermedades en frutales de carozo. Monitoreo de enfermedades por cultivo. In: Alaniz, S.; Gepp, V.; Mondino, P.; Leoni, C.; Mujica, V.; Núñez, S.; Scatoni, I. Guía de identificación y monitoreo de enfermedades y plagas en frutales de hoja caduca y vid bajo manejo integrado. Montevideo (UY): AFRUPI, 2016. p.27-37.| Tipo: Capítulo en Libro Técnico-Científico |
| Biblioteca(s): INIA Las Brujas. |
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| 3. | | ALANIZ, S.; GEPP, V.; MONDINO, P.; LEONI, C.; MUJICA, V.; NUÑEZ, S.; SCATONI, I. Monitoreo de enfermedades en frutales de pepita. Monitoreo de enfermedades por cultivo. In: Alaniz, S.; Gepp, V.; Mondino, P.; Leoni, C.; Mujica, V.; Núñez, S.; Scatoni, I. Guía de identificación y monitoreo de enfermedades y plagas en frutales de hoja caduca y vid bajo manejo integrado. Montevideo (UY): AFRUPI, 2016. p.39-59.| Tipo: Capítulo en Libro Técnico-Científico |
| Biblioteca(s): INIA Las Brujas. |
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| 4. | | ALANIZ, S.; GEPP, V.; MONDINO, P.; LEONI, C.; MUJICA, V.; NUÑEZ, S.; SCATONI, I. Monitoreo de enfermedades en uva de mesa. Monitoreo de enfermedades por cultivo. In: Alaniz, S.; Gepp, V.; Mondino, P.; Leoni, C.; Mujica, V.; Núñez, S.; Scatoni, I. Guía de identificación y monitoreo de enfermedades y plagas en frutales de hoja caduca y vid bajo manejo integrado. Montevideo (UY): AFRUPI, 2016. p.61-75.| Tipo: Capítulo en Libro Técnico-Científico |
| Biblioteca(s): INIA Las Brujas. |
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| 5. | | ALANIZ, S.; GEPP, V.; MONDINO, P.; LEONI, C.; MUJICA, V.; NUÑEZ, S.; SCATONI, I. Monitoreo de insectos plaga. Clasificación según orden. In: Alaniz, S.; Gepp, V.; Mondino, P.; Leoni, C.; Mujica, V.; Núñez, S.; Scatoni, I. Guía de identificación y monitoreo de enfermedades y plagas en frutales de hoja caduca y vid bajo manejo integrado. Montevideo (UY): AFRUPI, 2016. p.76-79.| Tipo: Capítulo en Libro Técnico-Científico |
| Biblioteca(s): INIA Las Brujas. |
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| 6. | | ALANIZ, S.; GEPP, V.; MONDINO, P.; LEONI, C.; MUJICA, V.; NUÑEZ, S.; SCATONI, I. Monitoreo de insectos plaga: orden acarina. In: Alaniz, S.; Gepp, V.; Mondino, P.; Leoni, C.; Mujica, V.; Núñez, S.; Scatoni, I. Guía de identificación y monitoreo de enfermedades y plagas en frutales de hoja caduca y vid bajo manejo integrado. Montevideo (UY): AFRUPI, 2016. p.127-131.| Tipo: Capítulo en Libro Técnico-Científico |
| Biblioteca(s): INIA Las Brujas. |
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| 7. | | ALANIZ, S.; GEPP, V.; MONDINO, P.; LEONI, C.; MUJICA, V.; NUÑEZ, S.; SCATONI, I. Monitoreo de insectos plaga: orden coleoptera. In: Alaniz, S.; Gepp, V.; Mondino, P.; Leoni, C.; Mujica, V.; Núñez, S.; Scatoni, I. Guía de identificación y monitoreo de enfermedades y plagas en frutales de hoja caduca y vid bajo manejo integrado. Montevideo (UY): AFRUPI, 2016. p.97-103.| Tipo: Capítulo en Libro Técnico-Científico |
| Biblioteca(s): INIA Las Brujas. |
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| 8. | | ALANIZ, S.; GEPP, V.; MONDINO, P.; LEONI, C.; MUJICA, V.; NUÑEZ, S.; SCATONI, I. Monitoreo de insectos plaga: orden díptera. In: Alaniz, S.; Gepp, V.; Mondino, P.; Leoni, C.; Mujica, V.; Núñez, S.; Scatoni, I. Guía de identificación y monitoreo de enfermedades y plagas en frutales de hoja caduca y vid bajo manejo integrado. Montevideo (UY): AFRUPI, 2016. p.119-121.| Tipo: Capítulo en Libro Técnico-Científico |
| Biblioteca(s): INIA Las Brujas. |
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| 9. | | ALANIZ, S.; GEPP, V.; MONDINO, P.; LEONI, C.; MUJICA, V.; NUÑEZ, S.; SCATONI, I. Monitoreo de insectos plaga: orden hemiptera. In: Alaniz, S.; Gepp, V.; Mondino, P.; Leoni, C.; Mujica, V.; Núñez, S.; Scatoni, I. Guía de identificación y monitoreo de enfermedades y plagas en frutales de hoja caduca y vid bajo manejo integrado. Montevideo (UY): AFRUPI, 2016. p.105-117.| Tipo: Capítulo en Libro Técnico-Científico |
| Biblioteca(s): INIA Las Brujas. |
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| 10. | | ALANIZ, S.; GEPP, V.; MONDINO, P.; LEONI, C.; MUJICA, V.; NUÑEZ, S.; SCATONI, I. Monitoreo de insectos plaga: orden lepidoptera. In: Alaniz, S.; Gepp, V.; Mondino, P.; Leoni, C.; Mujica, V.; Núñez, S.; Scatoni, I. Guía de identificación y monitoreo de enfermedades y plagas en frutales de hoja caduca y vid bajo manejo integrado. Montevideo (UY): AFRUPI, 2016. p.81-95.| Tipo: Capítulo en Libro Técnico-Científico |
| Biblioteca(s): INIA Las Brujas. |
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| 11. | | ALANIZ, S.; GEPP, V.; MONDINO, P.; LEONI, C.; MUJICA, V.; NUÑEZ, S.; SCATONI, I. Monitoreo de insectos plaga: orden thysanoptera. In: Alaniz, S.; Gepp, V.; Mondino, P.; Leoni, C.; Mujica, V.; Núñez, S.; Scatoni, I. Guía de identificación y monitoreo de enfermedades y plagas en frutales de hoja caduca y vid bajo manejo integrado. Montevideo (UY): AFRUPI, 2016. p.123-125.| Tipo: Capítulo en Libro Técnico-Científico |
| Biblioteca(s): INIA Las Brujas. |
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| 13. | | BUENAHORA, J.; BENTANCOURT, C.; SCATONI, I.; ASPLANATO, G.; PAULLIER, J.; PAZOS, J.; PINTOS, J.; GONZÁLEZ, A. Enemigos naturales del minador de las hojas de los cítricos, Phyllocnistis citrella Stainton (Lep. Gracillaridae). ln: Congreso Nacional de Horticultura, 8.; Seminario Regional de Frutilla, 2001, Salto, Uruguay. Resúmenes. Montevideo (Uruguay): SUH; INIA, 2001. p. 84 Sociedad Uruguaya de Horticultura; Instituto Nacional de Investigación Agropecuaria, Uruguay.| Biblioteca(s): INIA Las Brujas; INIA Salto Grande; INIA Tacuarembó; INIA Treinta y Tres. |
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| 15. | | CALVO, M.C.; DELGADO, S.; DUARTE, F.; GARCIA, F.; SCATONI, I.; GONZÁLEZ, A. Fruit flies (Diptera: Tephritidae) and hosts association in different ecosystems in Uruguay. International Journal of Pest Management, 2022, vol. 68, issue 4: "Uruguayan Society of Phytopathology (SUFIT): Plant protection for a sustainable agriculture", p.369-380. doi: https://doi.org/10.1080/09670874.2022.2126023 Article history: Received 30 April 2022, Accepted 10 September 2022, Published online: 11 November 2022. Funding: The authors want to thank Emily Silva and Mity Schlesener from UFPel and Eugenia Lorenzo from the UDELAR for their support,...| Tipo: Artículos en Revistas Indexadas Internacionales | Circulación / Nivel : Internacional - -- |
| Biblioteca(s): INIA Las Brujas. |
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| 18. | | DUARTE, F.; CALVO, V.; BORGES, A.; GARCÍA, C.; FRANCO, J.; NUÑEZ, S.; RIBES-DASI, M.; SCATONI, I. Caracterización espacial de Cydia molesta (Busck) (Lepidoptera: Tortricidae) en durazneros de la zona sur de Uruguay mediante métodos geoestadísticos. [resumen] Protección Frutícola. ln: Congreso Nacional de Horti-Fruticultura, 12. Jornadas Regionales de Manejo Poscosecha de Frutas. Seminario Suelos en Horticultura. Seminario Frutales de Pepita. 20-23 octubre 2012, Montevideo (UY) Trabajos presentados. Montevideo (UY): INIA; SUHF, 2010. p.55. Tesis de maestría en Ciencias Agrarias del primer autor, trabajo financiado por el Fondo de Promoción de Tecnología Agropecuaria (FPTA) del Instituto Nacional de Investigación Agropecuaria (INIA) (Proyecto FPTA 207)| Tipo: Abstracts/Resúmenes |
| Biblioteca(s): INIA Las Brujas. |
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| 20. | | NUÑEZ, S.; DE VLIEGER, J.J.; RODRÍGUEZ, J.J.; PERSOONS, C.J.; SCATONI, I. Sex pheromone of South American Tortricid Moth Argyrotaenia sphaleropa. Journal of Chemical Ecology, February 2002, Volume 28, Issue 2, pp 425?432. Article history: Received January 16, 2001 / Accepted September 22, 2001.
Funding text: Within the framework of the European Commission (Cooperation with nonmember countries, Project CI*-CT94-0006), a joint project TNO-INIA was...| Tipo: Artículos en Revistas Indexadas Internacionales | Circulación / Nivel : A - 1 |
| Biblioteca(s): INIA Las Brujas. |
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| Registros recuperados : 69 | |
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